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Home / samtools / 1.19.2
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README.txt 2024-01-24 1.5 kB
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samtools - changes v1.19.2
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Bug Fixes:

* Fixed a regression in 1.19.1 that broke BED filtering for inputs where the
  region start positions for the same reference were not sorted in ascending
  order. (PR #1975, fixes #1974.  Reported by Anže Starič)

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samtools - changes v1.19.1
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Bug Fixes:

* Fixed a possible array bounds violation when looking up regions in a BED
  file (e.g. using `samtools view -L`).  This could lead to crashes or the
  return of incomplete results if the BED file contained a large number of
  entries all referencing low positions on a chromosome. (PR #1962, fixes
  #1961.  Reported by geertvandeweyer)

* Fixed a crash in samtools stats that occurred when trying to clean up
  after it was unable to open a CRAM reference file. (PR #1957, fixes
  crash reported in samtools/htslib#1723.  Reported by Alex Leonard)

Documentation:

* Fixed inverted logic in the `samtools consensus --show-del` manual page
  description. (PR #1955, fixes #1951.  Reported by Mikhail Schelkunov)

* Added a description of the MPC section to the `samtools stats` manual page.
  (PR #1963, fixes #1954.  Reported by litun-fkby)
Source: README.txt, updated 2024-01-24