Incorrect +ve return from lseek on a pipe
Unfortunately I no longer have access to a Mac so this is simply impossible for me to do. The software hasn't changed in years, so this is an Apple OS change which has broken the software. From what I've been told by others the problem is that the application isn't signed so Apple now consider it unsafe. In order to fix this we'd need to pay apple to become an official developer that is able to sign their applications, I think... but I don't do apple development so I don't really know. However one...
Added -j/-J options to tg_index.
Fixed a data type overflow in Find Oligos when the total length of
Fixed long-standing SAM pileup bug.
Fix crash in gap5_cmd script.
Fix a crash when disassembling entire contigs.
Added a tg_index "-Q qual" option to override quality.