KR20190126812A - 질환 진단용 바이오마커 - Google Patents
질환 진단용 바이오마커 Download PDFInfo
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- KR20190126812A KR20190126812A KR1020197027295A KR20197027295A KR20190126812A KR 20190126812 A KR20190126812 A KR 20190126812A KR 1020197027295 A KR1020197027295 A KR 1020197027295A KR 20197027295 A KR20197027295 A KR 20197027295A KR 20190126812 A KR20190126812 A KR 20190126812A
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Abstract
Description
도 2는 저산소증 스트레스 하에 G9a 안정화의 기전의 사진 대표도이다. (a) MCF7 세포를 MG132(20 μM)의 존재 하에 지시된 발현 플라스미드를 이용하여 형질감염시키고, 항-Flag 항체를 사용하여 면역침전을 수행하고, 지시된 항체를 사용하여 면역블로팅하였다. (b) G9a 프롤린 하이드록실화를, MG132(20 μM)의 존재 하에 GFP-태깅된 PHD1, PHD2 또는 PHD3를 과발현하는 MCF7 세포에서 결정하였다. 항-하이드록시프롤린 항체를 사용하여 하이드록실화된 G9a의 면역침전을 수행하고, 뒤이어 항-Flag 항체를 이용하여 면역블로팅하였다. (c) MG132(20 μM)의 존재 하에 정상산소증or 저산소증에 노출된 Flag-태깅된 G9a를 과발현하는 MCF7 세포로부터의 항-하이드록시프롤린 항체를 이용한 프롤린 하이드록실화된 G9a의 면역침전이다. (d 및 e) G9a와 pVHL 사이의 상호작용을, 정상산소증 또는 저산소증 질환에서 지시된 발현 플라스미드를 이용하여 형질감염된 MCF7 세포로부터 결정하였고, 항-Flag 항체(d) 또는 DMOG로 처리되거나 또는 처리되지 않은 세포를 사용하여 면역침전을 수행하고, 항-HA(e)를 이용하여 면역침전시키고, 지시된 항체를 사용하여 면역블로팅시켰다. (f) RCC4 신세포암종 세포주 또는 지시된 바와 같이 정상산소증 및 저산소증 질환에 노출된 야생형 pVHL을 과발현하는 핵 추출물에서 G9a의 면역블로팅 분석이다. (g) 지시된 바와 같이 정상산소증 및 저산소증 질환에 노출된 G9a WT 및 P2A 돌연변이체를 이용하여 재구성된 G9a-/- MEF로부터의 핵 추출물에서 G9a의 면역블로팅 분석이다. (h) MG132(20 μM)의 존재 하에 정상산소증 및 저산소증에 노출된 Flag-태깅된 G9a WT 및 P2A 돌연변이체를 과발현하는 MCF7 세포로부터의 항-하이드록시프롤린 항체를 이용한 하이드록실화된 G9a의 면역침전이다.
도 3은 유방암 서브타입(subtype)에 걸쳐 저산소증 바이오마커 유전자의 발현 및 예견의 그래프 및 도식적 대표도를 보여준다. (a) shNS 및 shG9a를 발현하는 MCF7 세포로부터 저산소증-반응성 유전자의 배수 변화를 비교하는 차별적으로 발현되는 유전자의 계층적 클러스터링(hierarchical clustering)이다. 상향조절된 유전자 클러스터 및 하향조절된 유전자 클러스터를 제각기 적색 및 녹색으로 표시한다. (b) cDNA 마이크로어레이 분석 및 G9a-의존적 유전자 선택 과정의 전략을 보여주는 다이어그램이다. (c) 저산소증 바이오마커 유전자 서명; 마이크로어레이 분석으로부터 상대 발현을 표시하는 열-지도(heat-map)와 함께 도 4로부터 식별된 무재발(relapse-free) 생존율과 관련된 10개 유전자의 목록이다. (d) 10개의 G9a-억제된 유전자의 평균 발현을 유전자 서명으로서 무재발 생존율과의 관련성에 대해 분석하였다. 3개 데이터세트(KM 플로터(plotter), ROCK 및 TCGA) 각각에서 유방암 사례를 G9a-억제된 유전자 서명을 기초로 4개 사분위 중 하나에 할당하고, 이들 환자의 생존율을 비교하였다. 각각의 하위그룹에서 환자의 수를 괄호 안에 보여주고, 사분위 1 그룹(하부 25%)과 다른 그룹 사이의 생존율 비교에 대한 위험비(HR; hazard ratio) 및 로그-순위(log-rank) P 값을 또한, 각각의 패널에 보여준다. (g 및 h) 최저 발현(하부 25%, 사분위 1)을 갖는 종양과 나머지 종양 사이에서 유방암 환자의 무재발 생존율 분석을 KM 플로터 데이터베이스로부터 상이한 유방암 서브타입에서 G9a-억제된 유전자 서명을 사용하여 보여준다. ER-양성 및 ER-음성(e) 및 내강(Luminal) A, 내강 B, HER2-농화 및 기저-유사(Basal-like)(f).
도 4는 G9a-관련된 유전자의 식별의 도식적인 대표도이다. 마이크로어레이 분석으로부터의 저산소증 바이오마커 유전자 세트를 G9a 및 HIF 표적 유전자 발현과의 이의 역의 관계(inverse relationship)에 대해 여과하였다(제1 단계에서 좌측 원(circle)은 G9a에 역의 연관에 있는 유전자를 표시하고; 우측 원은 저산소증과 역의 연관에 있는 유전자를 표시함). 주목할 만하게는, 식별된 ER-양성 및 EF-음성 그룹 각각에서 44개의 유전자를 3개 데이터세트 사이에서 공통성(commonality)에 대해 분석하였다. ER-양성 및 ER-음성 그룹 각각에서 10개 유전자를 식별하였다. 조합된 20개 유전자 중에서, 14개의 별개의 유전자가 존재하였다(10개 유전자는 무재발 생존율과 관련있음).
도 5는 유전자 발현에서 G9a 저해의 분자 분석의 그래프 대표도이다. (a) UNC0642 처리 후 도 3으로부터 식별된 10개 저산소증 바이오마커 유전자의 정량적 RT-PCR 분석이다. 결과는 정상산소증(백색 박스) 또는 저산소증(검정색 박스) 조건 하에 비히클 처리와 비교하여 상대 mRNA 수준으로서 표현된다. (b) 정상산소증 또는 저산소증 질환에서 3 μM UNC0642로 처리된 MCF7 세포에서 AGTR1 및 ARNTL 프로모터 상에서 G9a, H3K9me2 및 Pol II의 ChIP 분석이다. (c) 정상산소증 및 저산소증에서 MCF7 세포에서 AGTR1 및 ARNTL 프로모터 상에서 shRNA-커플링된 ChIP 검정법이다. G9a, H3K9me2 및 RNA 중합효소 II에 의한 프로모터 점유율(occupancy)을 분석하였다. 값을 평균 ± SEM으로서 표현한다. 통계적 차이를 독립 표본 t-검정(unpaired t-test)에 의해 결정하였다(*P < 0.05, **P < 0.01), n = 3.
도 6은 G9a 및 G9a-의존적 유전자의 기능적 활성의 그래프 및 도식적 대표도를 보여준다. (a) 저산소증에서 shG9a MCF7 세포에서 변경된 상부 분자적 및 세포적 기능은 세포 발달, 성장 및 증식을 포함한다(p-값 범위: 세포-대-세포 신호전달 및 상호작용 = 8.10 x 10-3 내지 2.07 x 10-6; 세포 성장 및 증식 = 8.10 x 10-3 내지 2.70 x 10-6; 탄수화물 대사 = 8.10 x 10-3 내지 4.22 x 10-5; 세포 발달 = 8.10 x 10-3 내지 4.39 x 10-5; 세포 기능 및 유지 = 8.10 x 10-3 내지 4.91 x 10-5). (b) 인제뉴어티 경로 분석(Ingenuity Pathway Analysis)의 일부로서 기능 주석 네트워크 분석(functional annotation network analysis)은, 저산소증 바이오마커 유전자 서명에서 10개 유전자 중 7개 유전자의 하향조절이 유기체 사멸(P = 2.16 x 10-3)을 저해하는 것으로 예측됨을 드러내었다(즉, 저산소증 바이오마커 유전자 서명의 상향조절은 유기체 사멸을 촉진함). 적색 형상은 상향조절된 유전자를 표시하고, 녹색 형상은 하향조절된 유전자를 표시하고, 파선은 예측된 저해를 표시한다. (c) 제시된 바와 같은 다양한 유방 상피 세포로부터의 핵 추출물에서 G9a의 면역블로팅 분석이다. 히스톤 H3 수준을 로딩 대조군으로서 사용하였다. (d) 비히클(검정색 박스) 또는 G9a 저해제(5 μM에서 UNC0642; 투명한 박스) 처리 후, 도 6c에서 검사된 세포 상에서 MTT 검정법을 수행함으로써 세포 생존율을 분석하였다. (e) 지시된 바와 같이 다양한 농도의 UNC0642로 처리된 MCF7에 대한 IncuCyte ZOOM 타임-랩스 이미징 분석(time-lapse imaging analysis)이다. (d 및 e) 정상산소증에서 비히클 또는 G9a 저해제(UNC0642) 처리 후 MCF7 및 MDA231 세포 상에서 MTT 검정법을 수행함으로써 분석된 세포 생존율이다(투명한 원: 비히클; 회색 원: UNC0642 1 μM; 회색 삼각형: UNC0642 2 μM; 및 검정색 정사각형: UNC0642 3 μM).
도 7은 세포 운동성에 미치는 G9a의 영향의 사진 대표도이다. (a) 6시간 동안 비히클 또는 UNC0642 처리 후 MCF7 세포로부터의 핵 추출물에서 H3K9me2의 면역블로팅 분석이다. 라민 A/C 수준을 로딩 대조군으로서 사용하였다. (b) 정상산소증(21% O2) 조건과 저산소증(1% O2) 조건 둘 모두 하에, MCF7 세포에 대한 스크래치 상처 검정법(scratch wound assay)이다. 결과를 24시간마다 IncuCyte Zoom에 의해 수행된 실시간 이미징에 의해 평가하였다.
척도 막대(scale bar)는 700 μm, 10 X 배율에 상응한다. (c) G9a 저해제의 존재 또는 부재 하에 성장된 정상산소증(21% O2) 및 저산소증(1% O2) 조건에서 MDA231의 스크래치 상처 검정법이다. 척도 막대 700 μm, 10 X 배율. (d) 지시된 시간 동안 저산소증에서 shNS 또는 shG9a를 발현하는 MCF7 세포의 스크래치 상처 검정법으로부터의 현미경 사진이다. 척도 막대는 1000 μm, 4 X 배율에 상응한다.
도 8은 생체내에서 종양 성장에 미치는 G9a 저해 효과의 카툰 및 그래프 대표도이다. (a) 생체내 종양 성장 연구의 설계를 보여주는 다이어그램이다. (b) f B6 야생형(WT) 마우스(n = 6 내지 9) 그룹에게 제0일에 AT3 종양(1 x 106개 세포)을 피하 주사하였다. 종양-보유 마우스에게 2일마다 5 mg/kg UNC0642를 복강내 치료하였다. 종양 성장을 디지털 캘리퍼(digital caliper)를 사용하여 측정하고, 종양 부피를 평균 ± SEM으로서 표시한다. 비히클과 UNC0642-처리 마우스 사이에서 종양 부피에서 통계적 차이를 독립 표본 t-검정에 의해 결정하였다(* P < 0.05), n = 3. (c) 비히클 및 UNC0642-처리된 마우스에 대해 제시된 종점에서 종양 부피로서, 평균 ± SEM으로서 표시한다.
도 9는 식별된 저산소증 바이오마커를 사용하여 광범위한 저산소증 암의 진단 및 예후의 그래프 대표도이다. (a) 암 게놈 아틀라스(TCGA; The Cancer Genome Atlas)로부터의 신장 투명 세포 암종 환자를 사분위로 나누었으며, 이는 저산소증 바이오마커의 높은 발현을 갖는 환자가 더 양호한 생존율 결과와 관련있음을 보여준다. (b) 카플란 마이어(Kaplan Meyer) 플로터로부터의 폐 선암종 환자 데이터세트를 저(low) 그룹 및 고(high) 그룹으로 나누었으며, 이는 저산소증 바이오마커의 높은 발현을 갖는 환자가 더 양호한 생존율과 관련있음을 실증한다. (c) 흑색종에서 평가된 G9a의 예후값이다. 환자를 G9a 전사체의 발현을 기초로 사분위로 나누었으며(위험비 = 1.773; P = 0.0056), 이러한 사분위는 전체 생존율과 연관이 있다. (d) 환자를 G9a 전사체의 발현을 기초로 사분위로 나누었으며(위험비 = 2.532; P = 0.0106), 이러한 사분위는 전체 생존율과 연관이 있다. (e) 전이성 흑색종 환자의 결과의 G9a의 예후값이다. G9a 발현을 사용하여 계층화된 환자의 전체 생존율을 흑색종 환자와 전이 환자 사이에서 비교하였다. (g) 환자를 5-유전자 서브세트, 즉, ARNTL, CD1C, HHEX, KLRG1 및 MMP16의 평균 발현을 기초로 사분위로 나누었다. 환자의 전체 생존율은 흑색종에서 전체 생존율(OS) 및 무재발 생존율과 관련있다.
Claims (36)
- 대상체에서 저산소증 질환(예를 들어 저산소증 암)의 존재 또는 부재의 가능성(likelihood)을 평가하는 데 사용되는 지표(indicator)를 결정하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계; 및
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계로서, 여기서, 지표는 대상체에서 저산소증 질환의 존재 또는 부재의 가능성을 적어도 부분적으로 가리키는 것인 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에 존재하는 종양의 악성(malignancy)을 평가하는 데 사용되는 지표를 결정하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계; 및
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계로서, 여기서, 지표는 종양의 악성을 적어도 부분적으로 가리키는 것인 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에서 암 재발 가능성을 예측하는 데 사용되는 지표를 결정하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계; 및
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계로서, 여기서, 지표는 대상체에서 암이 재발하는 가능성을 적어도 부분적으로 가리키는 것인 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에서 저산소증을 감소시키는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계;
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계; 및
(3) 지표가 대상체에서 저산소증의 존재의 가능성을 적어도 부분적으로 가리킨다는 것을 기초로, 유효량의 G9a 길항제를 대상체에게 투여하는 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에서 저산소증 질환(예를 들어 저산소증 암)을 치료하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계;
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계; 및
(3) 지표가 대상체에서 저산소증 질환의 존재의 가능성을 적어도 부분적으로 가리킨다는 것을 기초로, 유효량의 G9a 길항제를 대상체에게 투여하는 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에서 저산소증 종양의 악성을 감소시키는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계;
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계; 및
(3) 지표가, 종양이 저산소증이라는 가능성을 적어도 부분적으로 가리킨다는 것을 기초로, 유효량의 G9a 길항제를 대상체에게 투여하는 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 대상체에서 저산소증 종양을 치료하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계;
(2) 바이오마커 값(들)을 사용하여 지표를 결정하는 단계; 및
(3) 지표가, 종양이 저산소증이라는 가능성을 적어도 부분적으로 가리킨다는 것을 기초로, 유효량의 G9a 길항제를 대상체에게 투여하는 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 제5항 내지 제7항 중 어느 한 항에 있어서,
대상체에게 보조 치료(ancillary treatment)가 투여되는, 방법. - 제8항에 있어서,
보조 치료가 화학 요법 및/또는 방사선 요법인, 방법. - 제1항 내지 제9항 중 어느 한 항에 있어서,
지표가 적어도 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20(및 이들 사이의 모든 정수)개의 저산소증 바이오마커에 대한 바이오마커 값을 포함하는 것인, 방법. - 제1항 내지 제10항 중 어느 한 항에 있어서,
시료가 생물학적 시료인, 방법. - 제11항에 있어서,
생물학적 시료가 종양 세포를 포함하는, 방법. - 제1항 내지 제12항 중 어느 한 항에 있어서,
적어도 하나의 저산소증 바이오마커가
(a) 서열번호 1-10 중 임의의 하나에 표시된 서열, 또는 이의 보체와 적어도 70%(또는 적어도 71% 내지 적어도 99% 및 이들 사이의 모든 정수 퍼센트) 서열 동일성을 공유하는 뉴클레오타이드 서열을 포함하는 폴리뉴클레오타이드 발현 생성물;
(b) 서열번호 202-211 중 임의의 하나에 표시된 아미노산 서열을 포함하는 폴리펩타이드를 인코딩하는 뉴클레오타이드 서열을 포함하는 폴리뉴클레오타이드 발현 생성물;
(c) 서열번호 202-211에 표시된 서열 중 적어도 일부와 적어도 70%(또는 적어도 71% 내지 적어도 99% 및 이들 사이의 모든 정수 퍼센트) 서열 유사성 또는 동일성을 공유하는 폴리펩타이드를 인코딩하는 뉴클레오타이드 서열을 포함하는 폴리뉴클레오타이드 발현 생성물;
(d) 중간 또는 높은 엄격성 조건 하에, (a), (b), (c)의 서열 또는 이의 보체에 혼성화하는 뉴클레오타이드 서열을 포함하는 폴리뉴클레오타이드 발현 생성물;
(e) 서열번호 202-211 중 임의의 하나에 표시된 아미노산 서열을 포함하는 폴리펩타이드 발현 생성물; 및
(f) 서열번호 202-211 중 임의의 하나에 표시된 서열과 적어도 70%(또는 적어도 71% 내지 적어도 99% 및 이들 사이의 모든 정수 퍼센트) 서열 유사성 또는 동일성을 공유하는 아미노산 서열을 포함하는 폴리펩타이드 발현 생성물
로 구성된 군으로부터 선택되는, 방법. - 제1항 내지 제13항 중 어느 한 항에 있어서,
바이오마커 값이 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커의 농도를 적어도 부분적으로 가리키는 것인, 방법. - 제1항 내지 제13항 중 어느 한 항에 있어서,
바이오마커 값이 대상체로부터 수득된 시료에서 적어도 하나의 저산소증 바이오마커의 유전자 발현의 수준을 적어도 부분적으로 가리키는 것인, 방법. - 제1항 내지 제13항 중 어느 한 항에 있어서,
바이오마커 값이 바이오마커의 풍부도(abundance)를 포함하는 것인, 방법. - 제1항 내지 제16항 중 어느 한 항에 있어서,
적어도 하나의 저산소증 바이오마커의 수준이 정상적인(즉, 비-저산소증) 질환의 존재와 연관이 있는 바이오마커의 수준에 비해 감소되고, 이로써 지표가 저산소증을 적어도 부분적으로 가리키는 것으로 결정되는, 방법. - 제1항 내지 제16항 중 어느 한 항에 있어서,
적어도 하나의 저산소증 바이오마커의 수준이 정상적인(즉, 비-저산소증) 질환의 존재와 연관이 있는 바이오마커의 수준과 대략 동일하고, 지표가 정상산소증(normoxia)을 적어도 부분적으로 가리키는 것으로 결정되는, 방법. - 대상체에서 저산소증 질환(예를 들어 저산소증 암)의 존재 또는 부재의 가능성을 평가하는 데 사용되는 지표를 결정하는 방법으로서, 상기 방법은:
(1) 대상체로부터 수득된 시료에서 적어도 하나의 그룹 1 저산소증 바이오마커(예를 들어 1, 2, 3, 4, 5, 6, 7, 8, 9 또는 10개의 저산소증 바이오마커)에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 단계;
(2) 그룹 2 저산소증 바이오마커에 대해 측정되거나 파생되는 바이오마커 값을 결정하는 단계로서, 여기서, 그룹 2 저산소증 바이오마커는 G9a인 단계; 및
(3) 바이오마커 값을 사용하여 지표를 결정하는 단계로서, 여기서, 지표는 대상체에서 저산소증 질환의 존재 또는 부재의 가능성을 적어도 부분적으로 가리키는 것인 단계
를 포함하거나, 구성되거나, 본질적으로 구성되는 방법. - 제19항에 있어서,
상기 방법은 조합 기능을 적어도 하나의 그룹 1 저산소증 바이오마커 값(들) 및 그룹 2 저산소증 바이오마커에 적용하는 단계를 추가로 포함하는, 방법. - 제19항 또는 제20항에 있어서,
지표가 그룹 1 저산소증 바이오마커 및 그룹 2 저산소증 바이오마커 상에 기록된 바이오마커 값의 비(ratio)인, 방법. - 제1항 내지 제21항 중 어느 한 항에 있어서,
바이오마커 값(들)이 현미경, 유세포분석, 면역검정법, 질량 분광법, 시퀀싱 플랫폼, 어레이 및 혼성화 플랫폼, 또는 이들의 조합을 사용하여 측정되는, 방법. - 저산소증의 가능성을 평가하는 데 사용되는 지표를 결정하기 위한 조성물로서, 상기 조성물은 적어도 하나의 cDNA, 및 상기 cDNA에 혼성화하는 적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브를 포함하거나, 구성되거나, 본질적으로 구성되며, 여기서, 적어도 하나의 cDNA는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는, 조성물.
- 적어도 하나의 cDNA, 및 상기 cDNA에 혼성화하는 적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브를 포함하거나, 구성되거나, 본질적으로 구성되는 복합체로서, 여기서, 적어도 하나의 cDNA는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는, 복합체.
- 제23항 또는 제24항에 있어서,
2개 이상의 cDNA, 및 상기 cDNA 중 개별적인 하나에 혼성화하는 적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브를 포함하는, 조성물 또는 복합체. - 제25항에 있어서,
조성물 또는 복합체가 세포 또는 세포 집단(population)으로부터 파생되는 mRNA에 상응하는 cDNA의 집단을 포함하는, 조성물 또는 복합체. - 제26항에 있어서,
세포가 종양 세포인, 조성물 또는 복합체. - 제23항 내지 제27항 중 어느 한 항에 있어서,
적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브가 cDNA 중 개별적인 하나에 혼성화하는, 조성물 또는 복합체. - 제23항 내지 제28항 중 어느 한 항에 있어서,
조성물 또는 복합체가 cDNA를 검출하기 위한 표지된 시약을 추가로 포함하는, 조성물 또는 복합체. - 제29항에 있어서,
표지된 시약이 표지된 상기 적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브인, 조성물 또는 복합체. - 제30항에 있어서,
표지된 시약이 표지된 상기 cDNA인, 조성물 또는 복합체. - 제23항 내지 제31항 중 어느 한 항에 있어서,
적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브가 고밀도 어레이 이외의 형태로 존재하는, 조성물 또는 복합체. - 대상체에서 저산소증의 가능성을 가리키는 지표를 결정하기 위한 키트로서,
상기 키트는:
(a) 저산소증 바이오마커의 정량화를 허용하는 적어도 하나의 시약으로서, 여기서, 적어도 하나의 저산소증 바이오마커는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는 시약; 및 선택적으로
(b) 적어도 하나의 시약을 사용하기 위한 설명서
를 포함하는, 키트. - 적어도 하나(즉, 2, 3, 4, 5, 6, 7, 8, 9, 10, 또는 10개 초과)의 cDNA, 및 각각의 제각기 cDNA에 대해 상기 cDNA의 반대쪽 상보 가닥에 혼성화하는 2개의 올리고뉴클레오타이드 프라이머, 및 상기 cDNA에 혼성화하는 올리고뉴클레오타이드 프로브를 포함하거나, 구성되거나, 본질적으로 구성되는 조성물로서, 여기서, 적어도 하나의 cDNA는 ARNTL, CD1C, HHEX, KLRG1, MMP16, FGFR2, GATA2, CEACAM7, OGN 및 AGTR1로부터 선택되는, 조성물.
- 제34항에 있어서,
조성물이 cDNA를 검출하기 위한 표지된 시약을 추가로 포함하는, 조성물. - 제34항에 있어서,
표지된 시약이 표지된 적어도 하나의 올리고뉴클레오타이드 프라이머 또는 프로브인, 조성물.
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| CN111477276B (zh) * | 2020-04-02 | 2020-12-15 | 上海之江生物科技股份有限公司 | 微生物的种特异共有序列的获得方法、装置及应用 |
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| WO2006124022A1 (en) * | 2005-05-13 | 2006-11-23 | Vanandel Research Institute | Microarray gene expression profiling in subtypes of clear cell renal cell carcinoma |
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| KR101142588B1 (ko) * | 2009-05-26 | 2012-05-10 | 서울대학교산학협력단 | 렙틴 메틸화를 통해 저산소 반응을 음성 조절하는 메틸전달효소를 포함하는 암 치료용 조성물 |
| EP2472263A1 (en) * | 2011-01-03 | 2012-07-04 | Commissariat À L'Énergie Atomique Et Aux Énergies Alternatives | Methods for the prognostic assessment of breast cancer |
| CN103492590A (zh) * | 2011-02-22 | 2014-01-01 | 卡里斯生命科学卢森堡控股有限责任公司 | 循环生物标志物 |
| WO2013075059A1 (en) * | 2011-11-18 | 2013-05-23 | Vanderbilt University | Markers of triple-negative breast cancer and uses thereof |
| KR101849409B1 (ko) * | 2011-12-31 | 2018-06-01 | 서울대학교산학협력단 | 폰틴의 메틸화 정도를 이용한 항암제 스크리닝 방법 |
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| WO2016057705A1 (en) * | 2014-10-08 | 2016-04-14 | Novartis Ag | Biomarkers predictive of therapeutic responsiveness to chimeric antigen receptor therapy and uses thereof |
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| AU2018223224A1 (en) | 2019-09-12 |
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