pymol-users Mailing List for PyMOL Molecular Graphics System

Hi, is it possible to set ambient occlusion for isosurfaces?

Hi Amir -

You can look at the `label` command (https://pymolwiki.org/index.php/Label) as well as related settings listed on that page.  For a label that is not tied to a specific atom or molecule selection (i.e. arbitrary placement), you can use a pseudoatom (https://pymolwiki.org/index.php/Pseudoatom) as the selection to which you attach the label.

Hope that helps.

Cheers,
Jared




On May 25, 2018 at 7:03:37 PM, Amir Hossein Sharifzadeh (ami...@gm...) wrote:

Hello Jared,
Thank you very much. I also have another question.
Do you know that if there is any possibility to add a title in PyMOL screen? I want to show some information about my objects there (distance, area, ...)
Thank you very much,
Amir

On Fri, May 25, 2018 at 7:49 AM, Jared Sampson <jar...@co...> wrote:
Hi Amir - 

It looks like you're overwriting obj1 with obj2.  Try giving them different names, e.g. "segment1" and "segment2" and you should be able to display both objects.

Hope that helps.

Cheers,
Jared


On May 24, 2018 at 5:10:59 PM, Amir Hossein Sharifzadeh (ami...@gm...) wrote:

Hello,
I am not able to load two objects together in pymol. But I can either load obj1 or obj2.
Both obj1 and obj2 are 3D geometry shapes, each shape contains several trainguels.
cmd.load_cgo(obj1, 'segment', 0)
cmd.load_cgo(obj2, 'segment', 0)
Any suggestions?
Thank you.
Amir

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Hi Amir - 

It looks like you're overwriting obj1 with obj2.  Try giving them different names, e.g. "segment1" and "segment2" and you should be able to display both objects.

Hope that helps.

Cheers,
Jared


On May 24, 2018 at 5:10:59 PM, Amir Hossein Sharifzadeh (ami...@gm...) wrote:

Hello,
I am not able to load two objects together in pymol. But I can either load obj1 or obj2.
Both obj1 and obj2 are 3D geometry shapes, each shape contains several trainguels.
cmd.load_cgo(obj1, 'segment', 0)
cmd.load_cgo(obj2, 'segment', 0)
Any suggestions?
Thank you.
Amir

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 Hello,
I am not able to load two objects together in pymol. But I can either load
obj1 or obj2.
Both obj1 and obj2 are 3D geometry shapes, each shape contains several
trainguels.

cmd.load_cgo(obj1, 'segment', 0)

cmd.load_cgo(obj2, 'segment', 0)

Any suggestions?

Thank you.

Amir

Hi,

I am currently working on my MSc thesis and I got confused if it is an
educational purpose which means that I can use PyMol edu citing it, of
course, but not buying a licence, or if it is considered to be an
academical research.

I would be very grateful if someone could clarify this for me.

Best,
Kristy

Hi Paul,

Looks like they are working on a new version of the plugin:
https://github.com/makson96/Dynamics/pull/95

You could give this modified version a try:
https://github.com/speleo3/Dynamics/blob/no-tk-mainloop/pymol_plugin_dynamics.py

Cheers,
  Thomas

> On May 17, 2018, at 1:50 PM, Paul Buscemi <bus...@um...> wrote:
> 
> 
> Dear Users,
> 
> I’ve been able to use Pymol 1.7 with Gromacs plugin ( ppa download and install ), but have not found a  plugin/method to use version2.1.1 ( Schrodinger maintained ).
> Is a plugin for v 2.1.1 available ?
> 
> System is linux Mint 18.1
> 
> Regards
> Paul

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Dear Users,

I’ve been able to use Pymol 1.7 with Gromacs plugin ( ppa download and install ), but have not found a  plugin/method to use version2.1.1 ( Schrodinger maintained ).
Is a plugin for v 2.1.1 available ?

System is linux Mint 18.1

Regards
Paul

Hmm, it's working for me now. No idea what changed, must've been my error.
Thanks!

-- Gary

On Wed, May 16, 2018 at 1:45 AM, Thomas Holder <
tho...@sc...> wrote:

> Hi Gary,
>
> "sphere_quality" works for me, for both regular atom sphere representation
> and for CGO spheres. What exactly did you do where it had no effect?
>
> Cheers,
>   Thomas
>
> > On May 15, 2018, at 10:14 PM, Gary Oberbrunner <
> ga...@da...> wrote:
> >
> > How can I get more sphere subdivision into the Collada export? I've
> tried sphere_quality 2 and cgo_sphere_quality 2, they seem to have no
> effect.
> >
> > --
> > Gary Oberbrunner
>
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.
>
>


-- 
Gary Oberbrunner -- CEO -- Dark Star Systems, Inc.

Hi Gary,

"sphere_quality" works for me, for both regular atom sphere representation and for CGO spheres. What exactly did you do where it had no effect?

Cheers,
  Thomas

> On May 15, 2018, at 10:14 PM, Gary Oberbrunner <ga...@da...> wrote:
> 
> How can I get more sphere subdivision into the Collada export? I've tried sphere_quality 2 and cgo_sphere_quality 2, they seem to have no effect.
> 
> -- 
> Gary Oberbrunner

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

How can I get more sphere subdivision into the Collada export? I've tried
sphere_quality 2 and cgo_sphere_quality 2, they seem to have no effect.

-- 
Gary Oberbrunner

Hi Andy,

> thanks for the responses. The -M option did the trick. What does it do?

Great! The -M ("mono") option skips the attempt to detect hardware stereo (a.k.a. quad buffered, available with Nvidia Quadro cards and 3D vision).

Did you install pymol with conda? Recently, pyqt=5.9 packages appeared in the default anaconda channel, but unfortunately PyQt >5.6 doesn't handle the stereo request properly on non-stereo hardware. Downgrading helps (conda install pyqt=5.6).

Cheers,
  Thomas

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Hi all,

thanks for the responses. The -M option did the trick. What does it do?

Best,
Andy


On 05/09/2018 10:14 PM, David Mathog wrote:
> On 09-May-2018 12:52, Thomas Holder wrote:
>> Hi Andy,
>>
>> Does it help if you launch PyMOL with "-M"?
>>
>> pymol -M
>>
>> If not, can you be more specific about the symptoms? Is it just slow
>> or do you get flickering, wrong rendering, crashes, etc.?
>>
>
> Are you working directly on the machine's console or over a network to 
> a remote X11 server?  Graphics intensive programs which are smooth 
> when running locally are often quite jerky when displayed remotely, 
> even on a wired local network.
>
>
>>
>>> On May 9, 2018, at 8:01 PM, Andreas Tosstorff 
>>> <and...@cu...> wrote:
>>>
>>> Hi all,
>>>
>>> I just installed PyMol 2.1 on my system (Centos 7) and there are 
>>> some issues with displaying any structures.
>>>
>>> I get the following error, however I'm not sure whether that's 
>>> what's causing the actual laggy graphics:
>>>
>>>  "This Executable Build integrates and extends Open-Source PyMOL.
>>>  Detected OpenGL version 2.0 or greater. Shaders available.
>>>  Geometry shaders not available
>>>  SMAA not available
>>>  Detected GLSL version 1.30.
>>>  OpenGL graphics engine:
>>>   GL_VENDOR:   Intel Open Source Technology Center
>>>   GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2)
>>>   GL_VERSION:  3.0 Mesa 17.0.1
>>> GL_ERROR : 1282"
>>>
>>> I'm new to Pymol and Linux so please excuse me if I'm missing 
>>> something.
>>>
>>> Thanks,
>>>
>>> Andy
>>>
>>>
>>> -- 
>>> M.Sc. Andreas Tosstorff
>>> Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
>>> Department Pharmazie
>>> LMU München
>>> Butenandtstr. 5-13 ( Haus B)
>>> 81377 München
>>> Germany
>>> Tel.: +49 89 2180 77059
>>>
>>> <gjphbmdilmkdlgcb.jpg>
>>
>> -- 
>> Thomas Holder
>> PyMOL Principal Developer
>> Schrödinger, Inc.
>
> Regards,
>
> David Mathog
> ma...@ca...
> Manager, Sequence Analysis Facility, Biology Division, Caltech
>
> ------------------------------------------------------------------------------ 
>
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...

-- 


-- 
M.Sc. Andreas Tosstorff
Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
Department Pharmazie
LMU München
Butenandtstr. 5-13 ( Haus B)
81377 München
Germany
Tel.: +49 89 2180 77059

Hi Roja,

Which PyMOL version do you use? The "attach_amino_acid" function had a bug in old versions, it was fixed in PyMOL 1.8.0.

A capped poly-threonine alpha helix can be built in PyMOL (1.8+) like this:

from pymol import cmd, editor
cmd.set('retain_order', 0)
cmd.fab('T' * 40, ss=1)
editor.attach_amino_acid("last name C", 'nme')
editor.attach_amino_acid("first name N", 'ace')

Cheers,
  Thomas

> On May 10, 2018, at 8:53 AM, roja rahmani <roj...@gm...> wrote:
> 
> Dear Thomas,
> 
> I tried both builder and command. But the problem is an NME doesn't connect to last C, even when i remove the last OXT.
> 
> Let me ask in different way. Please help me to build poly threonine(consist of 40 threonine amino acids) in alpha helical structure which is capped by NME and ACE. How can i exactly build it?
> 
> (I want to use its .pdb file as an input for amber99ff in GROMACS.)
> 
> Best regards
> -Roja
> 
> On Thu, 10 May 2018, 00:47 Thomas Holder, <tho...@sc...> wrote:
> Hi Roja,
> 
> This could be useful for you:
> 18 Nov 2017, NME and ACE capping from script
> https://www.mail-archive.com/pym...@li.../msg14812.html
> 
> I couldn't quite follow your description, which interface were you using? The "Builder" panel? The following works for me:
> 1) Click "Builder" button in the upper right
> 2) Click "Protein" tab
> 3) Click "NMe"
> 4) Click on the last C atom (C-terminus)
> 
> If there is an OXT atom, remove that first (e.g. with: "remove name OXT")
> 
> Hope that helps.
> 
> Cheers,
>   Thomas
> 
> > On May 9, 2018, at 9:11 PM, roja rahmani <roj...@gm...> wrote:
> > 
> > Hi,
> > 
> > I'm beginner in PYMOL. I want to add ACE and NME terminals to helical poly amino acid which is made by Peptide builder. I load the poly AA pdb file to pymol. Then:
> > 
> > Edit first (name N) 
> > 
> > Then i didn't know how to add residue so i got help from taps and select ACE.
> > But when i used this command,
> > Edit last (name C)
> > And then select NME from tabs, the NME were not connected to the last carbon and was completely separated.
> > Would you please help me how solve this problem?
> > 
> > Best regards
> > Roja

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Try to turn on heap verification for python.exe using the following 
registration key and then start pymol with `python.exe -m pymol`

[HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows NT\CurrentVersion\Image 
File Execution Options\python.exe]
"GlobalFlag"="0x02000000"
"VerifierFlags"=dword:00000001
"PageHeapFlags"="0x3"


Christoph


On 5/9/2018 5:32 PM, Gary Oberbrunner wrote:
> Thanks -- unfortunately it seems to be heap corruption. I can see where 
> it's detected:
> 
>          ntdll.dll!RtlpLogHeapFailure ()Unknown
> ntdll.dll!RtlFreeHeap()Unknown
> ucrtbase.dll!_free_base()Unknown
> _cmd.cp36-win_amd64.pyd!VLAFree(void * ptr) Line 222C++
> _cmd.cp36-win_amd64.pyd!CGOFreeImpl(CGO * I, short withVBOs) Line 447C++
> _cmd.cp36-win_amd64.pyd!CGOFree(CGO * & I) Line 435C++
> _cmd.cp36-win_amd64.pyd!OrthoInvalidateDoDraw(_PyMOLGlobals * G) Line 
> 2808C++
> _cmd.cp36-win_amd64.pyd!OrthoAddOutput(_PyMOLGlobals * G, const char * 
> str) Line 1175C++
> _cmd.cp36-win_amd64.pyd!PCatchWrite(_object * self, _object * args) Line 
> 2738C++
> 
> But that doesn't really tell me anything about where the actual heap 
> corruption happened.
> 
> On Wed, May 9, 2018 at 1:54 PM, Christoph Gohlke <cg...@uc... 
> <mailto:cg...@uc...>> wrote:
> 
>     I put a VS2015 build of svn rev 4189 including debug information
>     files for the pymol source at
>     <https://www.lfd.uci.edu/~gohlke/download/pymol-svn-4189.zip
>     <>" rel="nofollow">https://www.lfd.uci.edu/%7Egohlke/download/pymol-svn-4189.zip>>
> 
>     Hope this helps.
> 
>     Christoph
> 
> 
>     On 5/9/2018 7:34 AM, Gary Oberbrunner wrote:
> 
>         Hi; I'm running into a crash in Windows pymol, in the C
>         extension part (_cmd.cp36-win_amd64.pyd) using pymol open source
>         2.1.0. I'd like to debug it; is there a symbol file (.pdb)
>         available anywhere? Or failing that, can I rebuild the C
>         extension from source and create a pdb?
> 
>         -- 
>         Gary Oberbrunner
> 
> 
>     ------------------------------------------------------------------------------
>     Check out the vibrant tech community on one of the world's most
>     engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>     _______________________________________________
>     PyMOL-users mailing list (PyM...@li...
>     <mailto:PyM...@li...>)
>     Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>     <" rel="nofollow">https://lists.sourceforge.net/lists/listinfo/pymol-users>
>     Archives:
>     http://www.mail-archive.com/pym...@li...
>     <" rel="nofollow">http://www.mail-archive.com/pym...@li...>
> 
> 
> 
> 
> -- 
> Gary Oberbrunner -- CEO -- Dark Star Systems, Inc.

Thanks -- unfortunately it seems to be heap corruption. I can see where
it's detected:

          ntdll.dll!RtlpLogHeapFailure () Unknown
  ntdll.dll!RtlFreeHeap() Unknown
  ucrtbase.dll!_free_base() Unknown
  _cmd.cp36-win_amd64.pyd!VLAFree(void * ptr) Line 222 C++
  _cmd.cp36-win_amd64.pyd!CGOFreeImpl(CGO * I, short withVBOs) Line 447 C++
  _cmd.cp36-win_amd64.pyd!CGOFree(CGO * & I) Line 435 C++
  _cmd.cp36-win_amd64.pyd!OrthoInvalidateDoDraw(_PyMOLGlobals * G) Line 2808
C++
  _cmd.cp36-win_amd64.pyd!OrthoAddOutput(_PyMOLGlobals * G, const char *
str) Line 1175 C++
  _cmd.cp36-win_amd64.pyd!PCatchWrite(_object * self, _object * args) Line
2738 C++

But that doesn't really tell me anything about where the actual heap
corruption happened.

On Wed, May 9, 2018 at 1:54 PM, Christoph Gohlke <cg...@uc...> wrote:

> I put a VS2015 build of svn rev 4189 including debug information files for
> the pymol source at <https://www.lfd.uci.edu/~gohl
> ke/download/pymol-svn-4189.zip>
>
> Hope this helps.
>
> Christoph
>
>
> On 5/9/2018 7:34 AM, Gary Oberbrunner wrote:
>
>> Hi; I'm running into a crash in Windows pymol, in the C extension part
>> (_cmd.cp36-win_amd64.pyd) using pymol open source 2.1.0. I'd like to debug
>> it; is there a symbol file (.pdb) available anywhere? Or failing that, can
>> I rebuild the C extension from source and create a pdb?
>>
>> --
>> Gary Oberbrunner
>>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>



-- 
Gary Oberbrunner -- CEO -- Dark Star Systems, Inc.

On 09-May-2018 12:52, Thomas Holder wrote:
> Hi Andy,
> 
> Does it help if you launch PyMOL with "-M"?
> 
> pymol -M
> 
> If not, can you be more specific about the symptoms? Is it just slow
> or do you get flickering, wrong rendering, crashes, etc.?
> 

Are you working directly on the machine's console or over a network to a 
remote X11 server?  Graphics intensive programs which are smooth when 
running locally are often quite jerky when displayed remotely, even on a 
wired local network.


> 
>> On May 9, 2018, at 8:01 PM, Andreas Tosstorff 
>> <and...@cu...> wrote:
>> 
>> Hi all,
>> 
>> I just installed PyMol 2.1 on my system (Centos 7) and there are some 
>> issues with displaying any structures.
>> 
>> I get the following error, however I'm not sure whether that's what's 
>> causing the actual laggy graphics:
>> 
>>  "This Executable Build integrates and extends Open-Source PyMOL.
>>  Detected OpenGL version 2.0 or greater. Shaders available.
>>  Geometry shaders not available
>>  SMAA not available
>>  Detected GLSL version 1.30.
>>  OpenGL graphics engine:
>>   GL_VENDOR:   Intel Open Source Technology Center
>>   GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2)
>>   GL_VERSION:  3.0 Mesa 17.0.1
>> GL_ERROR : 1282"
>> 
>> I'm new to Pymol and Linux so please excuse me if I'm missing 
>> something.
>> 
>> Thanks,
>> 
>> Andy
>> 
>> 
>> --
>> M.Sc. Andreas Tosstorff
>> Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
>> Department Pharmazie
>> LMU München
>> Butenandtstr. 5-13 ( Haus B)
>> 81377 München
>> Germany
>> Tel.: +49 89 2180 77059
>> 
>> <gjphbmdilmkdlgcb.jpg>
> 
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.

Regards,

David Mathog
ma...@ca...
Manager, Sequence Analysis Facility, Biology Division, Caltech

Hi Roja,

This could be useful for you:
18 Nov 2017, NME and ACE capping from script
https://www.mail-archive.com/pym...@li.../msg14812.html

I couldn't quite follow your description, which interface were you using? The "Builder" panel? The following works for me:
1) Click "Builder" button in the upper right
2) Click "Protein" tab
3) Click "NMe"
4) Click on the last C atom (C-terminus)

If there is an OXT atom, remove that first (e.g. with: "remove name OXT")

Hope that helps.

Cheers,
  Thomas

> On May 9, 2018, at 9:11 PM, roja rahmani <roj...@gm...> wrote:
> 
> Hi,
> 
> I'm beginner in PYMOL. I want to add ACE and NME terminals to helical poly amino acid which is made by Peptide builder. I load the poly AA pdb file to pymol. Then:
> 
> Edit first (name N) 
> 
> Then i didn't know how to add residue so i got help from taps and select ACE.
> But when i used this command,
> Edit last (name C)
> And then select NME from tabs, the NME were not connected to the last carbon and was completely separated.
> Would you please help me how solve this problem?
> 
> Best regards
> Roja

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Hi Andy,

Does it help if you launch PyMOL with "-M"?

pymol -M

If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.?

Thanks,
  Thomas

> On May 9, 2018, at 8:01 PM, Andreas Tosstorff <and...@cu...> wrote:
> 
> Hi all,
> 
> I just installed PyMol 2.1 on my system (Centos 7) and there are some issues with displaying any structures.
> 
> I get the following error, however I'm not sure whether that's what's causing the actual laggy graphics:
> 
>  "This Executable Build integrates and extends Open-Source PyMOL.
>  Detected OpenGL version 2.0 or greater. Shaders available.
>  Geometry shaders not available
>  SMAA not available
>  Detected GLSL version 1.30.
>  OpenGL graphics engine:
>   GL_VENDOR:   Intel Open Source Technology Center
>   GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2) 
>   GL_VERSION:  3.0 Mesa 17.0.1
> GL_ERROR : 1282"
> 
> I'm new to Pymol and Linux so please excuse me if I'm missing something.
> 
> Thanks,
> 
> Andy
>  
> 
> -- 
> M.Sc. Andreas Tosstorff
> Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
> Department Pharmazie
> LMU München
> Butenandtstr. 5-13 ( Haus B)
> 81377 München
> Germany
> Tel.: +49 89 2180 77059
> 
> <gjphbmdilmkdlgcb.jpg>

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Hi,

I'm beginner in PYMOL. I want to add ACE and NME terminals to helical poly
amino acid which is made by Peptide builder. I load the poly AA pdb file to
pymol. Then:

Edit first (name N)

Then i didn't know how to add residue so i got help from taps and select
ACE.
But when i used this command,
Edit last (name C)
And then select NME from tabs, the NME were not connected to the last
carbon and was completely separated.
Would you please help me how solve this problem?

Best regards
Roja

Hi all,

I just installed PyMol 2.1 on my system (Centos 7) and there are some 
issues with displaying any structures.

I get the following error, however I'm not sure whether that's what's 
causing the actual laggy graphics:

  "This Executable Build integrates and extends Open-Source PyMOL.
  Detected OpenGL version 2.0 or greater. Shaders available.
  Geometry shaders not available
  SMAA not available
  Detected GLSL version 1.30.
  OpenGL graphics engine:
   GL_VENDOR:   Intel Open Source Technology Center
   GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2)
   GL_VERSION:  3.0 Mesa 17.0.1
GL_ERROR : 1282"

I'm new to Pymol and Linux so please excuse me if I'm missing something.

Thanks,

Andy


-- 
M.Sc. Andreas Tosstorff
Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
Department Pharmazie
LMU München
Butenandtstr. 5-13 ( Haus B)
81377 München
Germany
Tel.: +49 89 2180 77059

I put a VS2015 build of svn rev 4189 including debug information files 
for the pymol source at 
<" rel="nofollow">https://www.lfd.uci.edu/~gohlke/download/pymol-svn-4189.zip>

Hope this helps.

Christoph

On 5/9/2018 7:34 AM, Gary Oberbrunner wrote:
> Hi; I'm running into a crash in Windows pymol, in the C extension part 
> (_cmd.cp36-win_amd64.pyd) using pymol open source 2.1.0. I'd like to 
> debug it; is there a symbol file (.pdb) available anywhere? Or failing 
> that, can I rebuild the C extension from source and create a pdb?
> 
> -- 
> Gary Oberbrunner

Hi; I'm running into a crash in Windows pymol, in the C extension part
(_cmd.cp36-win_amd64.pyd) using pymol open source 2.1.0. I'd like to debug
it; is there a symbol file (.pdb) available anywhere? Or failing that, can
I rebuild the C extension from source and create a pdb?

-- 
Gary Oberbrunner

Hi Matthias,

This command will keep the first 100 frames:

mdelete -1, 100

You can also interactively delete frames on the movie panel by holding CTRL+SHIFT and dragging with the left mouse button to the left. Of course it's a freehand operation and will be harder to delete an exact number of frames.

Cheers,
  Thomas

> On May 2, 2018, at 7:10 AM, Matthias P. Mayer <M....@zm...> wrote:
> 
> Dear Pymol user,
> does anyone know how to remove frames from a movie. I have stored several scenes and want to create a movie that goes steady from the first to the last scene. When I use the movie>program>scene loop>steady the program always goes back to the first scene. How can I remove these last frames?
> 
> Best regards
> Matthias

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.

Dear Pymol user,
does anyone know how to remove frames from a movie. I have stored 
several scenes and want to create a movie that goes steady from the 
first to the last scene. When I use the movie>program>scene loop>steady 
the program always goes back to the first scene. How can I remove these 
last frames?

Best regards
Matthias